Two years after the events of the Fifth Holy Grail War, Shirō and Rin are living together in an apartment in London while they both study under the Mages Association at the Clock Tower, with Shirō being Rin's apprentice as protection for her. However, he is still struggling with following his ideals without following the same path as Emiya. One day, Rin has a duel with fellow classmate and neighbor Luvia Edelfelt, who repeatedly flirts with Shirō, and loses, much to her chagrin. Afterwards, she and Shirō talk about his invitation to officially join the Mages Association, which conflicts with his ideals. One morning, Rin decides to take Shirō to Glastonbury, the final resting place of King Arthur, so he could say goodbye to Saber. During the trip back home, Shirō reminisces about his graduation from his second year of high school. The next day, Shirō encounters Waver Velvet, a survivor of the Fourth Holy Grail War, who questions him about his reasons for coming to the Clock Tower and studying magic after surviving the Holy Grail War. Shirō says he knows it to be stupid, but he wants to dedicate his life to fulfilling his ideal. Waver responds that while his desire is indeed idiotic, it is not something to be laughed at. Later, Shirō returns to the apartment and informs Rin he has turned down the invitation, saying he cannot change who he is, even if he is destined to meet the same fate as Emiya. Rin responds that the difference between him and Emiya will be how far he goes in following his ideals. She then assures him that she will always be by his side.
In the epilogue, Emiya is shown sitting in Unlimited Blade Works, reconsidering his life and purpose. While he admits his regrets and a belief that Shirō will end up cursing the path he himself took, he asserts in the end that he was not wrong in his ideals.
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